NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGIcombinedJ13530_108282637

Scaffold JGIcombinedJ13530_108282637


Overview

Basic Information
Taxon OID3300001213 Open in IMG/M
Scaffold IDJGIcombinedJ13530_108282637 Open in IMG/M
Source Dataset NameCombined assembly of wetland microbial communities from Twitchell Island in the Sacramento Delta (Jan 2013 JGI Velvet Assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)712
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Peregrinibacteria → Candidatus Peribacteria → Candidatus Peribacterales → Candidatus Peribacteraceae → unclassified Candidatus Peribacteraceae → Candidatus Peribacteraceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Wetlands → Sediment → Wetland → Wetland Microbial Communities From Twitchell Island In The Sacramento Delta

Source Dataset Sampling Location
Location NameTwitchell Island in the Sacramento/San Joaquin Delta, CA
CoordinatesLat. (o)38.107057Long. (o)-121.647578Alt. (m)Depth (m)0 to .12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030371Metagenome / Metatranscriptome185Y

Sequences

Protein IDFamilyRBSSequence
JGIcombinedJ13530_1082826372F030371N/AMAFFCDDPSALSDIASKDTNRIVGTIAKALAANSPYMNVIGGGTFPSGVSDAIRSVVQMQAAPGDSLAVPTFVCDTEICGQTGAQDLTDTVEFTTRLESFRGRGPNICVKKGYAAFKGSYTMAEDSLKKLMVQYINADIRAQLYLRSASKFTAAGGYDFASLFTGGWETDLGVQ
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