NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold SwM_125266

Scaffold SwM_125266


Overview

Basic Information
Taxon OID3300001228 Open in IMG/M
Scaffold IDSwM_125266 Open in IMG/M
Source Dataset NameSwitchgrass rhizosphere microbial communities from Knoxville, Tennessee, USA - 12_joined
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Tennessee
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)589
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere → Switchgrass Rhizosphere Microbial Communities From Knoxville, Tennessee, Usa

Source Dataset Sampling Location
Location NameEast Tennessee Research and Education Center, Knoxville, Tennessee, USA
CoordinatesLat. (o)35.9606Long. (o)-83.9208Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F074524Metagenome119Y

Sequences

Protein IDFamilyRBSSequence
SwM_1252662F074524N/ARVIVLINKVETLSDRTPARETAEQLLSSSAIESVVLASARRDKPVLELCTR*
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