Scaffold SwM_127559

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold SwM_127559

Scaffold SwM_127559

Overview

Basic Information
Taxon OID	3300001228 Open in IMG/M
Scaffold ID	SwM_127559 Open in IMG/M
Source Dataset Name	Switchgrass rhizosphere microbial communities from Knoxville, Tennessee, USA - 12_joined
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Tennessee
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	889
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere → Switchgrass Rhizosphere Microbial Communities From Knoxville, Tennessee, Usa

Source Dataset Sampling Location
Location Name	East Tennessee Research and Education Center, Knoxville, Tennessee, USA
Coordinates	Lat. (^o)	35.9606	Long. (^o)	-83.9208	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F042788	Metagenome / Metatranscriptome	157	N

Sequences

Protein ID	Family	RBS	Sequence
SwM_1275592	F042788	AGGAG	MNMRPLIAGCVVAEILLNATSLVGQTLDIKPPTTGPEFRPDHDQRREEKSSVARPGLNEPHFISPFSVKTDARQLGIAGWTSTNPNVPPGHSLSGDGAGSLGFGVAAEWGARPRSERPLIR*

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