NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold B570J13883_100913

Scaffold B570J13883_100913


Overview

Basic Information
Taxon OID3300001253 Open in IMG/M
Scaffold IDB570J13883_100913 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 20AUG2008 deep hole epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1534
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.099444Long. (o)-89.404444Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026487Metagenome / Metatranscriptome197N

Sequences

Protein IDFamilyRBSSequence
B570J13883_1009132F026487AGCAGGMGAGQNETGARASFGFGGKVSETGTRKERPLEGGSRSRGVKEMVDVFRCLLAPHCGDRHRAMACEKFKGLSLPHRQSIIAEQELCANCLRHSENDIRRRKECLRRAAEPHWVSSSVRRPGRTPSPVEEMPTLGASAAGKVIFACRMEVMVKTKADLRQGEYGADLSVLFCPTRQMTAVVESVAIEKGIPWRAVPEVTVMLGDGRRETSTKLFLIEVKATRSHRASKEPEPVLIAAYGVQNLAPFAAAAPELPLLRHRFPSARTASMGTLAQKAGPIDLVIARDYRKQWPSVTSPSCFEADNLYLMRSNFYPGQLLYGQADPDAVGIKM
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