NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold B570J13893_108732

Scaffold B570J13893_108732


Overview

Basic Information
Taxon OID3300001273 Open in IMG/M
Scaffold IDB570J13893_108732 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - Practice 20APR2010 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)619
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, WI
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009503Metagenome / Metatranscriptome317Y
F021065Metagenome / Metatranscriptome220Y

Sequences

Protein IDFamilyRBSSequence
B570J13893_1087321F021065N/AEEFTCHDAAIHLAKANTDYWQTRSGGYSTEKSLHDLIAQDAQSIGSEWVVAKYLNVEFDPFEQKGKTKADVGSHFEVRWTKYVSGQLIIHEYDRTDDVAILVTGESPHFFIAGWIPIAMAKRPKYRHTKQPNWWVTQINLQPIENLRRSNYGHNSV*
B570J13893_1087322F009503AGGAGMDTIQFECRKCKKVTKQVIHKVTDNLPSGVEVIQCTKCEVMGVAQIGTSNANL*
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