NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold LCLOrf001_1003554

Scaffold LCLOrf001_1003554


Overview

Basic Information
Taxon OID3300001325 Open in IMG/M
Scaffold IDLCLOrf001_1003554 Open in IMG/M
Source Dataset NameMarine microbial communities from the Red Sea - Atlantis II brine metagenomic assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2150
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → unclassified viruses → Circular genetic element sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The Red Sea

Source Dataset Sampling Location
Location NameRed Sea
CoordinatesLat. (o)21.351508Long. (o)38.078207Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005551Metagenome397Y
F005580Metagenome396Y
F010737Metagenome300N

Sequences

Protein IDFamilyRBSSequence
LCLOrf001_10035543F005580AGGAGMKKSIPHPSVTGMASGLAIAAYLNEGQTIFGPFGKKLGVTEGVIKDITDGELGTAFSTLSSNAVDMIGTEQGRKTLVGASLVAMAGAFARKQFPQLKLGGSKLYFRI*
LCLOrf001_10035544F010737N/AMAVTTITRTYDSTPTDKTYFSLTDNMSSSSLGNIQTPQGSSRISRIDVAVDAPDTKGFVLAGRLLGSNMAEQNLTLAGSCGDVGDAGGTPQFNMIPTNFSVAGVNNIDLQVAFQFTTGTPTASSLSVTLYFE*
LCLOrf001_10035546F005551GAGMTLGPSKSVSRAKDGKIYGWSGSYSLTSSAVTLLDYTNPSAFYLTRVTLGIDWSSISAGEVLSYTINVDNQALFIEKFVVTADNLGQQPKMYEFIIPPNSTVKVQATQSANNGGISCILTGYR
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.