NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold LCLOrf001_1003873

Scaffold LCLOrf001_1003873


Overview

Basic Information
Taxon OID3300001325 Open in IMG/M
Scaffold IDLCLOrf001_1003873 Open in IMG/M
Source Dataset NameMarine microbial communities from the Red Sea - Atlantis II brine metagenomic assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3512
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → unclassified viruses → Circular genetic element sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The Red Sea

Source Dataset Sampling Location
Location NameRed Sea
CoordinatesLat. (o)21.351508Long. (o)38.078207Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005319Metagenome405Y
F010737Metagenome300N
F090277Metagenome108Y

Sequences

Protein IDFamilyRBSSequence
LCLOrf001_10038731F005319GGTGGMTDQTFAIIWILSFGLYFLIYTFWIPVKTQQRIENWLRDSESDETLLLALEVIVKRIREQTLYDFEEFMLPQARENLQKFWSGAMGNAAKELKKSEEGGQLSLMANMANELSGQPWYVQAAASKLMPII
LCLOrf001_10038733F090277N/AMIGIDWSSMGAGEVLSYTINVDGQGLYVEKFTITDMNLGNQPELFEFVIPPNSTVKIQGTQSNNNGAISCILTGYRV*
LCLOrf001_10038736F010737AGGAGMSSTAITRTFDATPTDKTYFSLTDNMSSSNLGNIQVPDGASRIARIDCAFDTPDTKGVVCAAKLSGSNMSEQNLTIYGSCGDTADAGGIPSYNQVDVDFPVSGVNNIDLQIALQYTTGTATASGGSVTLFFE*
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