NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold ML8_10032450

Scaffold ML8_10032450


Overview

Basic Information
Taxon OID3300001335 Open in IMG/M
Scaffold IDML8_10032450 Open in IMG/M
Source Dataset NameWetlands benthic microbial communities from British Columbia, Canada - ML8
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3314
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (60.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Wetlands → Unclassified → Wetlands Benthic → Wetlands Benthic Microbial Communities From British Columbia, Canada

Source Dataset Sampling Location
Location NameBritish Columbia, Canada
CoordinatesLat. (o)49.283333Long. (o)-119.583333Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014681Metagenome / Metatranscriptome261Y

Sequences

Protein IDFamilyRBSSequence
ML8_100324509F014681AGGAGGMRSFLKDIRGVVDLGLVLMIGIAFAGLAVIAYIIYTLVDMLDATGSAAQTMGNITSGFDDAIALILVAITIFILSIAISALLMLRGR*
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