NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold ML7_10000045

Scaffold ML7_10000045


Overview

Basic Information
Taxon OID3300001336 Open in IMG/M
Scaffold IDML7_10000045 Open in IMG/M
Source Dataset NameML7
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterPennsylvania State University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)101743
Total Scaffold Genes168 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)138 (82.14%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Benthic Lake → Benthic Lake Microbial Communities From British Columbia, Canada, For Chemocline Samples

Source Dataset Sampling Location
Location NameWetlands, British Columbia
CoordinatesLat. (o)49.283333Long. (o)-119.583333Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F039532Metagenome / Metatranscriptome163Y
F074774Metagenome / Metatranscriptome119Y

Sequences

Protein IDFamilyRBSSequence
ML7_10000045111F039532AGGAGMSYIDYLPEDGRFTEEELWEAIAEANGLDVNEIMDGDLVEWI*
ML7_1000004520F074774AGAAGGLPRGSSLHHSEAYLKKRLHLDKKTPQEIAKECNVSIQVIYRQMKKFGLK*
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Institute for Fundamental Biomedical Research
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