Basic Information | |
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Taxon OID | 3300001346 Open in IMG/M |
Scaffold ID | JGI20151J14362_10128987 Open in IMG/M |
Source Dataset Name | Pelagic Microbial community sample from North Sea - COGITO 998_met_01 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 799 |
Total Scaffold Genes | 2 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea |
Source Dataset Sampling Location | ||||||||
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Location Name | Helgoland, sampling site Kabeltonne | |||||||
Coordinates | Lat. (o) | 54.184167 | Long. (o) | 7.9 | Alt. (m) | Depth (m) | 1 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F001319 | Metagenome / Metatranscriptome | 723 | Y |
F013703 | Metagenome / Metatranscriptome | 269 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
JGI20151J14362_101289871 | F001319 | AGGAG | MKKLWSIAILLSVVFAQLPQPTMVGQDNLKTPTLSINNFVNQAEIVGLEDSRVFLGISNILTENVMDSRYDLVEQDSDFEMTARVVYLGRPRTSTTILGLFRRETTTTEVRVVVELKNKKTGKVVSGNGTGTIDRDISSTGFQINEELPF |
JGI20151J14362_101289872 | F013703 | N/A | LSSSLGQISRENFLNLNLMYGYRYPIKIRDTNINLQTFVSYTIFRYFEGLKTENKYLLLESPILIYPGASVDINFTETFKMNFGFNIGYNTLVNDLGERNISYSIIFGTNF* |
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