NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI20156J14371_10006287

Scaffold JGI20156J14371_10006287


Overview

Basic Information
Taxon OID3300001347 Open in IMG/M
Scaffold IDJGI20156J14371_10006287 Open in IMG/M
Source Dataset NamePelagic Microbial community sample from North Sea - COGITO 998_met_06
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8041
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (11.54%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameHelgoland, sampling site Kabeltonne
CoordinatesLat. (o)54.184167Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016739Metagenome / Metatranscriptome245Y
F042579Metagenome158N
F044160Metagenome155N
F057691Metagenome136N
F096053Metagenome105N

Sequences

Protein IDFamilyRBSSequence
JGI20156J14371_1000628711F096053N/AMAIGKKNSGFYKQDAVMGKLSADARKPYKVNAVVAQALEQGKRRKAYLEERAKNHVPRFVK*
JGI20156J14371_1000628722F016739N/AMRLNGGLLSEGTSEWVRLRRAWKKWNASCHPDDQIDWIEFLEEHS*
JGI20156J14371_1000628724F044160N/AMVKFWTLMSGTSYIASISNPSYTQNPFCAVKYESIKKADVAANEWKRKYGLPVMVHVILEEDYERLAHRGFYSENL*
JGI20156J14371_1000628725F042579N/AMKKFNAFEKGLIVDALNYYVANLEAEVEEASGGGVTIVAPGFYTMAKNELIDKVESLTKKSK*
JGI20156J14371_100062873F057691AGGAGMIASIKKIQEQLTEAKRQLLNAQCIHKVDRGDTARFRVQAALGVVQRLDKEVGDRIAWEKWGKGPWPEDGNKV*
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