Scaffold JGI20160J14292_10003049

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold JGI20160J14292_10003049

Scaffold JGI20160J14292_10003049

Overview

Basic Information
Taxon OID	3300001349 Open in IMG/M
Scaffold ID	JGI20160J14292_10003049 Open in IMG/M
Source Dataset Name	Pelagic Microbial community sample from North Sea - COGITO 998_met_10
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	12965
Total Scaffold Genes	21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (33.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location Name	Helgoland, sampling site Kabeltonne
Coordinates	Lat. (^o)	54.184167	Long. (^o)	7.9	Alt. (m)		Depth (m)	1
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F102786	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
JGI20160J14292_100030492	F102786	AGGA	MLKGKERQIVLDCLYQEIYEHEMRKSGFAARSSMVARIEAQLKYENMSHDRRVIVYHNFISKEITKYIEHDIQNSGAMYWVNGSPEKRNARIKEYARYAYARMPNQQKIAICEKLGYVYIK*

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