Basic Information | |
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Taxon OID | 3300001351 Open in IMG/M |
Scaffold ID | JGI20153J14318_10000894 Open in IMG/M |
Source Dataset Name | Pelagic Microbial community sample from North Sea - COGITO 998_met_03 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 24099 |
Total Scaffold Genes | 34 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 33 (97.06%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
Associated Families | 2 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea |
Source Dataset Sampling Location | ||||||||
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Location Name | Helgoland, sampling site Kabeltonne | |||||||
Coordinates | Lat. (o) | 54.184167 | Long. (o) | 7.9 | Alt. (m) | Depth (m) | 1 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F100708 | Metagenome / Metatranscriptome | 102 | Y |
F102852 | Metagenome | 101 | N |
Protein ID | Family | RBS | Sequence |
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JGI20153J14318_1000089410 | F102852 | AGGAG | MRNIIEKTFGCDVSLNREMEVDNYSPRMAKELVALQKRVKKTHPLAKFRHTADDALAIQLSPQSMCFDAKVSWDTDAYIVMTVSTRRERELPYTEHRGNIAYSDRRFTSITKTLARATKLIKDTKSVTGERVLEKVMQGTIDPYGRGLKQAQEKLDELQSRVFGSMRGYQREQALLEYSLAAVEQRPVRADIRHEVEDCTNKYLEAKKDLGDSIAACDGLQTLSIYKLKNIDKVFFHYRDTTAGEMQRVKHVDDVNKLPQEVLAKLSVLQATGIDAMDNVGYSYETRVLTSIGCVTKDAYDYDFVEDAMCVYISPETMAEVETLVGY* |
JGI20153J14318_1000089422 | F100708 | AGG | VTTTKINVMTPVEKERLSLELERQVREYVEAGGTVTQCPPRAFTQRDKTKRKFDGSQFDSLTDPSNRDIGAMRPTKNKGGSE* |
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