NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI20153J14318_10035716

Scaffold JGI20153J14318_10035716


Overview

Basic Information
Taxon OID3300001351 Open in IMG/M
Scaffold IDJGI20153J14318_10035716 Open in IMG/M
Source Dataset NamePelagic Microbial community sample from North Sea - COGITO 998_met_03
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2050
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameHelgoland, sampling site Kabeltonne
CoordinatesLat. (o)54.184167Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006870Metagenome / Metatranscriptome363Y
F007087Metagenome / Metatranscriptome358N
F093220Metagenome / Metatranscriptome106N

Sequences

Protein IDFamilyRBSSequence
JGI20153J14318_100357161F093220N/AKIDRMQENLNIIDKNVRVLEKIINTAENNLTAEINNVCNVN*
JGI20153J14318_100357165F007087AGGMKKLLLIALTIPNFVLADEFKLICEGEESKYRNDVLENTSKISLKLQVRDDSILIDSMTYKSKTFDYGAVKGSSKYVKEDAQIVLETTQVSNDCDTSLLNVKLNRTSGXIETISKRIGTCDGSSFTATTKFKGKCK*
JGI20153J14318_100357166F006870N/AMKKINLFFLLLLSFATPTQASSLETKLSPQGADEYNFFITGDADSSEKKLRDVFQNKVNEVCGTRFEIISIKVDHISTEGVKKYILNGTFKCFVNSQM*
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