NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI20157J14317_10080184

Scaffold JGI20157J14317_10080184


Overview

Basic Information
Taxon OID3300001352 Open in IMG/M
Scaffold IDJGI20157J14317_10080184 Open in IMG/M
Source Dataset NamePelagic Microbial community sample from North Sea - COGITO 998_met_07
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1278
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Porticoccaceae → unclassified Porticoccaceae → Porticoccaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameHelgoland, sampling site Kabeltonne
CoordinatesLat. (o)54.184167Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F056916Metagenome / Metatranscriptome137N

Sequences

Protein IDFamilyRBSSequence
JGI20157J14317_100801841F056916N/ANSSAALVNQIDRGIKLAGAGYAYANTGGALTSGSLAGTAHISTAQLDAYNAALGNMSDYQTYGDVQALLESQAATEFDLMNTAVEEFTEVVVDMIAVVEVAEIAAEAETPDDKAEVQEYVVANETALTITQDQVDTYNQSLDDIEEHGNNASAFLGVAANEDAVAFLQQGAENNNTNANEGTLTFSQDQQWVKLSHTGTNNATAVYINGQQGSFDMNFYLSEAEWLAAGAESELYLTGPTALGYKCFMSQEDCET*
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