Basic Information | |
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Taxon OID | 3300001353 Open in IMG/M |
Scaffold ID | JGI20159J14440_10000907 Open in IMG/M |
Source Dataset Name | Pelagic Microbial community sample from North Sea - COGITO 998_met_09 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 22091 |
Total Scaffold Genes | 30 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 26 (86.67%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea |
Source Dataset Sampling Location | ||||||||
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Location Name | Helgoland, sampling site Kabeltonne | |||||||
Coordinates | Lat. (o) | 54.184167 | Long. (o) | 7.9 | Alt. (m) | Depth (m) | 1 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F025174 | Metagenome / Metatranscriptome | 203 | N |
F049760 | Metagenome | 146 | Y |
F102852 | Metagenome | 101 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
JGI20159J14440_1000090712 | F049760 | AGG | MIMDNRDRVMVELDAYLDTLEEDYVDPAERKREMAERAADEAMSTWFEE* |
JGI20159J14440_1000090717 | F025174 | AGGAG | MSNFTDPMAALEEAEYLAKEEKRTMCVVEVEPNMIVVVSKREALGMGKIILETCVPFEENFNVYD* |
JGI20159J14440_100009076 | F102852 | AGGAG | MRNKIETIFGFDASLNREMEDSYYAPQMADELAVLQKRVKKSHPFAKFRHTADDALAIQLSPQSMCFDAKVLWDKDAYIVMTVSTRRERELPYADLDRYGIAYSDRSFTSLTRDLARATKLVKDTKSATSERVLEKVMQGTIDPFGRGLKQAQEKLDTLQRDVFSSMRNSVSNEALLEYSLATMEQRPVRADIRHQVEDCTNKYLESKRDLGDSVAACDGLQTLSIYKLKNIDKVFYHYRDTTAGEMQRVKHVDDVNKLPQEVLAKLSVLQATGIDAMENVGYSYDTKVLTSIGCVRRDASDYDFVEDAMCVYVSPETMTEVEALAEY* |
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