NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI20159J14440_10148384

Scaffold JGI20159J14440_10148384


Overview

Basic Information
Taxon OID3300001353 Open in IMG/M
Scaffold IDJGI20159J14440_10148384 Open in IMG/M
Source Dataset NamePelagic Microbial community sample from North Sea - COGITO 998_met_09
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)682
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameHelgoland, sampling site Kabeltonne
CoordinatesLat. (o)54.184167Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022080Metagenome / Metatranscriptome216Y
F031507Metagenome / Metatranscriptome182Y

Sequences

Protein IDFamilyRBSSequence
JGI20159J14440_101483842F022080N/AMNLGLVKMNESKTELYGVQYYKSKWERNLGDSLTIDGEKWLVGIIGDTKNDVISALNKIVSKQNKIVRKQKYYQTKKENMIMNNILNDVMKELNL*
JGI20159J14440_101483843F031507N/AMIKVNDKIKFENKYGQIQEGIVTDNNYQCDFDVDLNGCIRVSVDYGSSIIGTVNTLID

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