NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI20155J14468_10057639

Scaffold JGI20155J14468_10057639


Overview

Basic Information
Taxon OID3300001354 Open in IMG/M
Scaffold IDJGI20155J14468_10057639 Open in IMG/M
Source Dataset NamePelagic Microbial community sample from North Sea - COGITO 998_met_05
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1591
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameHelgoland, sampling site Kabeltonne
CoordinatesLat. (o)54.184167Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002188Metagenome / Metatranscriptome585Y
F003777Metagenome / Metatranscriptome469Y

Sequences

Protein IDFamilyRBSSequence
JGI20155J14468_100576391F003777GGAMSKSKPNIITPFDDKQRFKNLVQEIINDTTIFTHVPDSISLSGVLFTLTFSNKKFVYEDVKVDITSDYVDVYLQGIKKTADLYTVIDNGTDIVINFTENITLRPEDIVNTDFSVKG
JGI20155J14468_100576392F002188AGGAGMGVNQLVKILEQVHEPDEFQLVAHDLNHGLYYIWKLENAKMKDLNVNLREFRKEHARFDIFINGQYILEKDYITAHNGKDFLVKFLKSNFPYVLEASDDIKIEGDIDLV*
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