NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI12269J14319_10053633

Scaffold JGI12269J14319_10053633


Overview

Basic Information
Taxon OID3300001356 Open in IMG/M
Scaffold IDJGI12269J14319_10053633 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2370
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.13Long. (o)11.88Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F044614Metagenome / Metatranscriptome154Y

Sequences

Protein IDFamilyRBSSequence
JGI12269J14319_100536333F044614N/AMPRRLIIAAISALLGAVVFAPISMAQMRGSGFGRGVNVSFNGRPHSHSFGPSAIFLGDPFYADYPVAPLTIPPQYVLVQPTPAIDTTPEVKSEPLMIELQGNRYVRYGGKQQLAERGANSPPDYVAADAKSPSLQQAQPELPPTVLIFRDGHREQVPGYAIVGATLYANGDYWQSGHWTKNIELSALNIPATVQANHDNGVKFLLPSAPNEVITRP*
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