NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold A3035W6_1026424

Scaffold A3035W6_1026424


Overview

Basic Information
Taxon OID3300001359 Open in IMG/M
Scaffold IDA3035W6_1026424 Open in IMG/M
Source Dataset NamePermafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A30-35cm)- 6 month illumina
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Tennessee
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1133
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost → Permafrost And Active Layer Microbial Communities From Mcgill Arctic Research Station (Mars)

Source Dataset Sampling Location
Location NameAxel Heiberg Island, Nunavut, Canada
CoordinatesLat. (o)79.26Long. (o)-90.46Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003244Metagenome / Metatranscriptome498Y
F005657Metagenome / Metatranscriptome394Y

Sequences

Protein IDFamilyRBSSequence
A3035W6_10264242F003244GGAGGVKWKSRRDPRGKIGDERVRTKFAWLPVEADDGYTYWLTPVVVREKLLPKVTRGGFEDDEQEWEVVEAKPVAGGKKRSRKK*
A3035W6_10264244F005657N/ALKGQIAGRLNIVEDKMDPQTYDQLVTDLAWFAFRFARDPDTKMRKIFR*

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