NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold YBBDRAFT_1002321

Scaffold YBBDRAFT_1002321


Overview

Basic Information
Taxon OID3300001372 Open in IMG/M
Scaffold IDYBBDRAFT_1002321 Open in IMG/M
Source Dataset NameYB-Back-sed
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of South Carolina
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)602
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Sediment → Marine Estuarine → Marine And Estuarine Microbial Communities From Columbia River Coastal Margin

Source Dataset Sampling Location
Location NameYoungs Bay mouth
CoordinatesLat. (o)46.15968Long. (o)-123.80651Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F069486Metagenome / Metatranscriptome124N
F098291Metagenome / Metatranscriptome104N

Sequences

Protein IDFamilyRBSSequence
YBBDRAFT_10023211F069486N/AMINPNTILGEWVAALQSCADLVTAIGGDSDNVRAFLEGLATDNNLRLAILKMPPGSILVAWNGTTPRRLSGGALHFAHRFSLYVRAAEQDSGGTYADLFWLLVSAIPTGAPSWSSLLHFQIDPDCYPMD
YBBDRAFT_10023212F098291N/AVTVTVVRHARVLEESGAMANFEEISVNPADFQIPPAKGDWVTAWGAQYVVTTLRQPDAYGMIALTLLQRSS*

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