NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold YBBDRAFT_1255288

Scaffold YBBDRAFT_1255288


Overview

Basic Information
Taxon OID3300001372 Open in IMG/M
Scaffold IDYBBDRAFT_1255288 Open in IMG/M
Source Dataset NameYB-Back-sed
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of South Carolina
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1047
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium → Mesorhizobium sp. Mes31(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Sediment → Marine Estuarine → Marine And Estuarine Microbial Communities From Columbia River Coastal Margin

Source Dataset Sampling Location
Location NameYoungs Bay mouth
CoordinatesLat. (o)46.15968Long. (o)-123.80651Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F060459Metagenome / Metatranscriptome133Y

Sequences

Protein IDFamilyRBSSequence
YBBDRAFT_12552882F060459GGAGGMWVVLGFLVAAAIGLATVLAACSGRQAQLGDHPWILHDTAKGHVDIMAGLAGFAFTGVVLIVTLAHDRLGAGVISLNTVIVMFLVAFLFFIGNAFLISYMPHRDVSGDFVPRVHLSLASTIEYRTVFLSWFALLPLLEANGFGRISYILYFLLPLSLLFGSVLISMAADGLGLLRV
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