NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI1356J14229_10037008

Scaffold JGI1356J14229_10037008


Overview

Basic Information
Taxon OID3300001380 Open in IMG/M
Scaffold IDJGI1356J14229_10037008 Open in IMG/M
Source Dataset NameSubsurface groundwater microbial communities from S. Glens Falls, New York, USA - GMW37 contaminated, 5.8 m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2680
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Contaminated → Groundwater → Groundwater Microbial Communities From Coal-Tar-Waste-Contaminated Well In S. Glens Falls, New York, Usa

Source Dataset Sampling Location
Location NameS. Glens Falls, New York, USA
CoordinatesLat. (o)43.099444Long. (o)-73.604444Alt. (m)Depth (m)5.8
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F098286Metagenome / Metatranscriptome104Y

Sequences

Protein IDFamilyRBSSequence
JGI1356J14229_100370083F098286GGAGMNPTSLKSGMQCTLADGSLVEVRGVQSDKVHVLVKYLDSLDNPKIPVGSEHQVPFEEIIAEYMGAHAEGRT*

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