NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI20127J14776_1009762

Scaffold JGI20127J14776_1009762


Overview

Basic Information
Taxon OID3300001382 Open in IMG/M
Scaffold IDJGI20127J14776_1009762 Open in IMG/M
Source Dataset NameHot spring sediment microbial communities from Joseph's Coat, Yellowstone National Park, USA - JC3_ASED
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1656
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → unclassified archaeal viruses → Nanoarchaeotal virus 1(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Hot Spring Sediment → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location
Location NameJoseph's Coat, Yellowstone National Park, Wyoming, USA
CoordinatesLat. (o)44.376Long. (o)-110.69Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F062912Metagenome / Metatranscriptome130Y
F077497Metagenome / Metatranscriptome117Y
F087443Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
JGI20127J14776_10097622F077497N/AMDQEQINKIERIIEERIIEKYLFETTSNTDYELRKMDVIIKYLIYQKLKSIEEKLNAIDQTLYEMANPGLFEK*
JGI20127J14776_10097623F087443N/AMGQKEGPKKNYWMVFNETDNIDYIEKEIAKTSIDLNMDILEMRAWIFKAFVYDPEVKAKVIEFIKKNGSRTNQ*
JGI20127J14776_10097625F062912N/AMMNPMEILEKTYNLFLISEIIESESDLDKELERLLVDRDYNTMAKTLLYVLIYTLNNDSTYKNIRNIYINEAIDLLYMIDRIEFDDERIMKKFIQLIYRFISYSLEYKIKFITDHEKR
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