Scaffold JGI20127J14776_1031101

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold JGI20127J14776_1031101

Scaffold JGI20127J14776_1031101

Overview

Basic Information
Taxon OID	3300001382 Open in IMG/M
Scaffold ID	JGI20127J14776_1031101 Open in IMG/M
Source Dataset Name	Hot spring sediment microbial communities from Joseph's Coat, Yellowstone National Park, USA - JC3_ASED
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	582
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Vibrionales → Vibrionaceae → Vibrio → unclassified Vibrio → Vibrio sp. 16	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Hot Spring Sediment → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location
Location Name	Joseph's Coat, Yellowstone National Park, Wyoming, USA
Coordinates	Lat. (^o)	44.376	Long. (^o)	-110.69	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F022018	Metagenome / Metatranscriptome	216	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI20127J14776_10311011	F022018	GGTGG	VAEKEDVVGAVVSGFDMILRHNSERPWADAAFAIDYLEGFDDLNDSDLIVTLAGWAGRSYKEFKGLWDGLSDKEKSEALADIEYEIAVLGFEELLKVIAADFDVMEDKDMRERIINAAKRYLNGEIDFYDMAEELENIFWPTEKDKKEYEDALRYFWNG

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