NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI20190J14840_1018717

Scaffold JGI20190J14840_1018717


Overview

Basic Information
Taxon OID3300001384 Open in IMG/M
Scaffold IDJGI20190J14840_1018717 Open in IMG/M
Source Dataset NameArctic peat soil from Barrow, Alaska - NGEE Surface sample 53-3 shallow-072012
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)589
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil → Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa

Source Dataset Sampling Location
Location NameBarrow Environmental Observatory site, Barrow, Alaska
CoordinatesLat. (o)71.2999Long. (o)-156.61Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006628Metagenome / Metatranscriptome368Y
F069412Metagenome / Metatranscriptome124Y

Sequences

Protein IDFamilyRBSSequence
JGI20190J14840_10187171F006628N/AEENTMIGRLVKAVVVAVVIAAVIQSLPDIKRYLELRQM*
JGI20190J14840_10187172F069412AGGMETIIGFIAGYLTGVSQGRAGMERARSSLDEIRKSPEVRRMVADGVGLAQVVLGRVAKGGLSGAIGGVSDLITGSAPAGDERRAA*

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