NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Lau_10012782

Scaffold Lau_10012782


Overview

Basic Information
Taxon OID3300001392 Open in IMG/M
Scaffold IDLau_10012782 Open in IMG/M
Source Dataset NameELSC Metagenome
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2947
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (77.78%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → unclassified viruses → Circular genetic element sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Black Smokers Hydrothermal Plume → Black Smokers Hydrothermal Plume Microbial Communities From The Eastern Lau Spreading Center

Source Dataset Sampling Location
Location NameKilo Moana - ELSC (Lau Basin)
CoordinatesLat. (o)-20.0Long. (o)176.0Alt. (m)Depth (m)2600
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005319Metagenome405Y
F014809Metagenome260Y
F100046Metagenome103Y

Sequences

Protein IDFamilyRBSSequence
Lau_100127824F005319AGGALSDEQFFVVWILSFFLYLGIYTWHIPLRTQKKIESWLRSDESDETLLMSLEVITKKIREQMLIDFEEFMLPQARENLQKFWAGAMGNAAKELKGSEEGSNLSLLHNITQDLSGQPWYVQALASKMLPMITEAVKTQPKRTSDAVLGMGLQK*
Lau_100127828F014809AGGAMVTTIQRSFDSTPVDKEYFSLTDNMNSSSLGNIQVPQNSQRISRVDCAFDTTNAKGYQVVCRLLGSNMSEQNFTIMGVAGDTADAGACVGFQSIPVAFPLAGVNNIDLQIAVQFASGGSASASSGSVTLYFE*
Lau_100127829F100046N/ADGRKTLVTASLVAMLGAFARKQFPQLKLGGSKLYFRI*
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