Scaffold Lau_10112589

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Lau_10112589

Scaffold Lau_10112589

Overview

Basic Information
Taxon OID	3300001392 Open in IMG/M
Scaffold ID	Lau_10112589 Open in IMG/M
Source Dataset Name	ELSC Metagenome
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3272
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (87.50%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Black Smokers Hydrothermal Plume → Black Smokers Hydrothermal Plume Microbial Communities From The Eastern Lau Spreading Center

Source Dataset Sampling Location
Location Name	Kilo Moana - ELSC (Lau Basin)
Coordinates	Lat. (^o)	-20.0	Long. (^o)	176.0	Alt. (m)		Depth (m)	2600
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002426	Metagenome	560	Y
F014552	Metagenome	262	Y
F052279	Metagenome	143	Y

Sequences

Protein ID	Family	RBS	Sequence
Lau_101125891	F052279	GGA	MTDEIFALVWVLSFGLYLVIYTYWIPLRTQKKIESWLISE
Lau_101125895	F002426	AGGAG	MGLQTRTYSLAGQSITAGTFVAMSQLMGSTQSTTNPEGMNRVVRISLSATPEQDSATDGVSIFKFAGDGVAVQQIFAGPGWSVQAAGPLGGNDGQPVVIENSAGLFDIIPGNQIDFSVSCTTAETCDLAISITYAA*
Lau_101125897	F014552	GGAG	MSLKQDKKYSLGTPSLMRGLDKGQECEVKFLTDPKPVETEHGSKFDIQVQLLSHPHESYSSLPKEGRRLTWRTNCHVVRVTVMDLFNNNTEDFQKDWYDCTWTISCKEDGNIWIDA*

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