NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI20183J14883_104952

Scaffold JGI20183J14883_104952


Overview

Basic Information
Taxon OID3300001400 Open in IMG/M
Scaffold IDJGI20183J14883_104952 Open in IMG/M
Source Dataset NameArctic peat soil from Barrow, Alaska - NGEE Surface sample 415-3 deep-072012
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)598
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Butyrivibrio → Butyrivibrio proteoclasticus(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil → Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa

Source Dataset Sampling Location
Location NameBarrow Environmental Observatory site, Barrow, Alaska
CoordinatesLat. (o)71.2999Long. (o)-156.61Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F087938Metagenome110Y

Sequences

Protein IDFamilyRBSSequence
JGI20183J14883_1049521F087938N/AKYRVRIAGAGVLEDLRKRIPQQSEGLRERTMKQMLGNFLTLIGLLAVSVSCLAQNGGSSASHPPADSSQPALKMQTLTAALSGEWSLDVKWETNASMPNGLVNTGEETWRAGPGGHTLLEEEHLRSHQGDVFLFGVVWWNSTKKNLQGLECQNLLPQTCDVKGALNDITMSWDGKQFVIDEIETSNTGKKSIWHEVWSD

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