NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI20189J14885_1001146

Scaffold JGI20189J14885_1001146


Overview

Basic Information
Taxon OID3300001401 Open in IMG/M
Scaffold IDJGI20189J14885_1001146 Open in IMG/M
Source Dataset NameArctic peat soil from Barrow, Alaska - NGEE Surface sample 53-3 deep-072012
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7826
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil → Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa

Source Dataset Sampling Location
Location NameBarrow Environmental Observatory site, Barrow, Alaska
CoordinatesLat. (o)71.2999Long. (o)-156.61Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025819Metagenome / Metatranscriptome200Y

Sequences

Protein IDFamilyRBSSequence
JGI20189J14885_10011463F025819AGGMDPANTSSMRNFSIFATLLFCVFAANSYAQDPVLYWSAADSETIPLDPASLHAGRVYHPAVGGGGLHVQIDSRYPVTVAMAWADEWNAAMRPGAPANFSLLCIKEHVTSAIYECHLPSDRPMIITFRDERRPEKPVLATIGAILGPGARQFISPNDLHIQYYNCIQPEFHWRRILDEKYQITPVPKVYSLMTPDHDGQELSVKIKSPIPVTVALLPSHLADQVYDKTLTLTDALDKTGCKERGVQSMSFNCTFDVAAGTQTLLILPDIDFSGHKKATVEADTVKCVEHCELLPPPPNP*

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