Scaffold JGI20187J14854_1000383

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold JGI20187J14854_1000383

Scaffold JGI20187J14854_1000383

Overview

Basic Information
Taxon OID	3300001406 Open in IMG/M
Scaffold ID	JGI20187J14854_1000383 Open in IMG/M
Source Dataset Name	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 53-2 deep-072012
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	6457
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (28.57%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatimonas → Gemmatimonas aurantiaca	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil → Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa

Source Dataset Sampling Location
Location Name	Barrow Environmental Observatory site, Barrow, Alaska
Coordinates	Lat. (^o)	71.2999	Long. (^o)	-156.61	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F004189	Metagenome / Metatranscriptome	449	Y
F089566	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI20187J14854_10003832	F004189	GGAGG	MRRFSDRSGIDWSAFETARPGGLPDRRVKAANVTVSFKCDDGSEVAMDLPVGALEGLTDEELILLLTRGLM*
JGI20187J14854_10003837	F089566	N/A	IAGVLLTAGCRGNGDSDPVPASLPGTYAYAAKGSTFKKPWEFYVKLDLTPDRHYTLTLDKNIDGQKDPRETSVGAYAVSGDQILLRDVRPPLGPSKDVHKLLIKADSLIAEVGWTSELFLKGVGAPNVVLVKQRGS*

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