NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI11705J14877_10002824

Scaffold JGI11705J14877_10002824


Overview

Basic Information
Taxon OID3300001419 Open in IMG/M
Scaffold IDJGI11705J14877_10002824 Open in IMG/M
Source Dataset NameSaline surface water microbial communities from Etoliko Lagoon, Greece - halocline water (15 m)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)9174
Total Scaffold Genes27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (62.96%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium TMED228(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Sediment → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece

Source Dataset Sampling Location
Location NameGreece: Etoliko Lagoon
CoordinatesLat. (o)38.4825Long. (o)21.315Alt. (m)Depth (m)15
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F062275Metagenome / Metatranscriptome131N
F062276Metagenome131N

Sequences

Protein IDFamilyRBSSequence
JGI11705J14877_1000282412F062276N/AMKTILSLKQIFKDRKVSNNEVVXXYDXIADAVTVDLLKGKSIDAAQVALVSNVMSIANSYKGKKFAIDLLQGALAELESEHFVETGNKLS*
JGI11705J14877_1000282424F062275AGGAMIAHTIDLVGEFKALPTNHEQWWEEYKKGEKFARLIKKKNALPLKEIYKKMYEDGIHYLQLHFEGGHDEGGFDGDFVFLDEDKNPMTIKDLSKYSPTGWIDEYTPLEYTIDKGKNKITQVFEYRNTNYSDVKVTQDWLVNKWYEFGFLEEWGSFAFEGNVYGEVVVSTKDGSYNVDANETFEQYESKDFEGKMFDE*
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