NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold JGI11705J14877_10047618

Scaffold JGI11705J14877_10047618


Overview

Basic Information
Taxon OID3300001419 Open in IMG/M
Scaffold IDJGI11705J14877_10047618 Open in IMG/M
Source Dataset NameSaline surface water microbial communities from Etoliko Lagoon, Greece - halocline water (15 m)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)1489
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Sediment → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece

Source Dataset Sampling Location
Location NameGreece: Etoliko Lagoon
CoordinatesLat. (o)38.4825Long. (o)21.315Alt. (m)Depth (m)15
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F068253Metagenome / Metatranscriptome125Y

Sequences

Protein IDFamilyRBSSequence
JGI11705J14877_100476181F068253N/AKIKKRKRKSYDKGTYESENKTWSFDYNEGNVEFLVNLVRGMNFNIDQKIKDDFEKIISIKKNPIEHFPMLTRKMGGYVYNDKVVEELDPRRAVMKAKLEGCTVFDDSVVDSMKPKQSMDKILLGDSQNWFVNSNIHHFLEIFSLIKTVDKCIIMTSSDNLSSLESVVENLFASGFNHEEICVMFRFKKNKEWFDGNKYIKNNGVNVYDPNKRIFIISERVPKPLIADGVDPQLIIYNLPIAPSHYKTQAWLQHKPTVVYYSAGKPSGVENCADV*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.