NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold yes_10317087

Scaffold yes_10317087


Overview

Basic Information
Taxon OID3300001425 Open in IMG/M
Scaffold IDyes_10317087 Open in IMG/M
Source Dataset NameGoat rumen bacterial communities from Langston, Oklahoma, USA - velvet
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCornell University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1452
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Foregut → Rumen → Goat Rumen → Goat Rumen Microbial Communities From Langston University, Oklahoma, Usa

Source Dataset Sampling Location
Location NameLangston, Oklahoma, USA
CoordinatesLat. (o)35.453976Long. (o)-97.515884Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F037488Metagenome / Metatranscriptome168N

Sequences

Protein IDFamilyRBSSequence
yes_103170871F037488N/AFLNYFKIFQTLYDTHPPTQYANYFHCTSLFDLEKVNKINNNDSFLKAIATFINEVTFSKKKIFIEFSTEDSVANAIKVLKMLKDPKKYLYCLHMARPKVADIDFIKFVEIFEYIDNIEDVHFFEDCAKKIIEDKINVGKLYYVNLDQIPVDKVIEYSTQYPNKIKELYAFENKEYDKIKKVCDLNSETLIRIPNCKLDLYPNLKNVEIVTINSEPLPDPLPDNFNYSSVKNLETIFIEDDSEEKTNFAIELINKCPNLEKVSFATFSELTQEQFLKIFSTTKSNKIKEICVTCQEFEEGIDFAPIFKNLPKLSKFRVDCHCSMDFLYALHPIISCEKVAPTYPILEQLINNYLNEDEDNYLKGEFPNDFEPFFEYFKKKENIMNRFEKIWGDSASTFELPYFSHLIINKSAEIAKFNVKKVGTVHVLCPVDDKIKQFLEKVKPDFIKVKEGKLDDSVSNATKIVYCADTGDMKF
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