NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold F14TB_102381804

Scaffold F14TB_102381804


Overview

Basic Information
Taxon OID3300001431 Open in IMG/M
Scaffold IDF14TB_102381804 Open in IMG/M
Source Dataset NameAmended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1490
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Grasslands → Soil → Soil Microbial Communities From Kansas Great Prairie, Usa, Amended With Brdu

Source Dataset Sampling Location
Location NameKanza Prairie, Kansas, USA
CoordinatesLat. (o)39.100992Long. (o)-96.608258Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027058Metagenome196Y
F060440Metagenome133Y

Sequences

Protein IDFamilyRBSSequence
F14TB_1023818041F027058AGTAGMWLGPVVFIIVSLFLWKYLGAVFVPELVTRQVFAILPALSDLQLVILINAAILYFGAYFAFSIFWGRLRRFFHNPFLAGLALWLVNVVVFFPILGRGMLGYRMPQGXXXXXFPLFVAHWMFARGLQFQDRRT*
F14TB_1023818045F060440N/AMSLLESLVSVAIISTVVMFAVPSLIKARENYQLDAVARQVAGKMQWTRIKAISRNRDCRMRVSSPSSYVVECQYPEWQADEMVVLPAGFRITATASPEFHVRGNVAPTATLTVWDKHSKTKQIIVNITGRVRVD*
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