NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI24006J15134_10007035

Scaffold JGI24006J15134_10007035


Overview

Basic Information
Taxon OID3300001450 Open in IMG/M
Scaffold IDJGI24006J15134_10007035 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-53
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5735
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (64.29%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)49.5666Long. (o)-138.6666Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018089Metagenome237Y
F029428Metagenome / Metatranscriptome188Y
F030892Metagenome184N
F031659Metagenome182Y

Sequences

Protein IDFamilyRBSSequence
JGI24006J15134_1000703510F030892AGGMENLVIKDSETLMERLLNPQMSDHYKTLFFGKYGTRVYEIKVGRKWVXMRSNSHRTRMPLAKFKVHAFLEWRRQAMTMASVEAFIETDRYFKPKGWWKNYGFESNPKDFVYDKSRLAW*
JGI24006J15134_1000703512F031659GGAGMKKKCENPNGLQNMQTIADAKTRKSVRFNSLEKAKRYLKSKGYRYTQAFNMKEDRSMIYQGRFGWVKVSSTKDFLNKTTMEQGTVWNIVKI*
JGI24006J15134_100070355F029428N/AMGRQIGNDEGSQVTFRKSIYGKSDGGKGAKPRPLSISKQEYEANWDLIFGNKNGNKKENKK*
JGI24006J15134_100070359F018089AGGAMKNTTTQTPFEVKDPKASASYGQVQRIAMQFSKAKGCPKDIKFGTIRGHFLAKLNAKKFLTQGDVVKILSMKALPSADLKAMRSYKKLVSIS*
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Institute for Fundamental Biomedical Research
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