NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI24006J15134_10036677

Scaffold JGI24006J15134_10036677


Overview

Basic Information
Taxon OID3300001450 Open in IMG/M
Scaffold IDJGI24006J15134_10036677 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-53
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2107
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Maribacter → unclassified Maribacter → Maribacter sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)49.5666Long. (o)-138.6666Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001656Metagenome / Metatranscriptome656Y
F012226Metagenome / Metatranscriptome282Y
F049044Metagenome / Metatranscriptome147N

Sequences

Protein IDFamilyRBSSequence
JGI24006J15134_100366772F012226N/AMRGNILWEQPPQKVELPNLGNYGFGPYYEGPHTTWHFQFFTEQAGVYGEMVDPTMHLVEDFSLIPIMAECQNTANFPVKTFMTKELQGSERQKVIGALAGGIINTYFSYAGPIDK*
JGI24006J15134_100366773F001656AGGAGMPATSNNSGNMARRQSFNGRALTFVEVIFGVDITGSATTPESKDSTFDAVSKIVNKNGNLIAQSYRLAAKATDDDAAEAETIAADESIDSYQYIVEGTPGQYNAADSAGDVNMDIDATVLAAAEVDLEADILAKLDIGDSARIVQVKIRTLLPEGHASGDASSFVGMFDQRGDA*
JGI24006J15134_100366775F049044N/AGVDVTLLTVDFVVDVSAETGDLTSGSTSAGLDMTRHAFAHQGLQILAEGPLVDSDTQKTYMVRTDNLDSLSSTTTVAALQAYIRTLDQSSDSFPGVTADLTGATVTETKIGILAANAVT*
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