NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI24003J15210_10000458

Scaffold JGI24003J15210_10000458


Overview

Basic Information
Taxon OID3300001460 Open in IMG/M
Scaffold IDJGI24003J15210_10000458 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-28
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)17400
Total Scaffold Genes30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (30.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → Viruses(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)48.9699Long. (o)-130.6666Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006848Metagenome / Metatranscriptome363N
F007366Metagenome352N
F011489Metagenome290N
F013089Metagenome274N
F022880Metagenome212N

Sequences

Protein IDFamilyRBSSequence
JGI24003J15210_1000045810F011489AGAAGGMNSGSRKGWNSFLTKHYLKLVRIARRWTDSPSDLVHHTYLRCLDKRFPDGDSENPLGYFVKAMYTEATRGKFKDLYHVTDADPKEQAFESDWTKAIQREQMQLILDRLSWFDRTIFSLYLQGWNMADVSRRSRIGESTLYRSLHITRKILKDVLRNGTKED*
JGI24003J15210_1000045816F013089N/AMKTRNSTALSLNSKNPFAKRERNKSLKPKKMGQSKIKTIQPNGTYDSQNGMMYKFEIELESGDSGEVSAKSEDRWSIGDEVEFEVTPSKWGDKMKLMKPGFTPNQSRGSNPDIQKRIDASWAIGHAINQESDPEKVLEAAEFLLSIRATLISKL*
JGI24003J15210_100004582F006848N/AMMELKLPHRWSDLSLGELQVMMTADNPLEKISICSGYSVEKLRAMPQKLIEAASAHLDNLLTQETARHEKVVEMDGKRFGFIPSWDEFTAGEWIDMENHLEDFWANAHKITALLYREVTYELGDKYEIKKYTAKEDASIFEEMPADLVSGMLLFFWTSRNQLLHDMQFSLLEVADKAIQSAKNGDGITSSIPSQEKTFSKWTRLQNSLFKSSSNTSAI*
JGI24003J15210_1000045820F007366N/AMRGTPLKETKLGKWFKTKAPKVFDLIGEIVPGADALKAIGALIDNTDTSDEEKTKAKLLMEEIASADRANARNREIEITKTLGQRDWMQVFVGSAAMIIGIVMVVWAKTGVQDKEIFFHILGFAEGTLVGQVVNYYFGAAKK*
JGI24003J15210_100004589F022880N/AMFFVTAQKRTDRLYICKGCEHFVDKTKSCGDLVTEAFTDSELCGCHMPTKTRLKVASCPLGKWEAEIKQADLEAIKTFLKTENQFRTNGQLAQLYSKVTGTNTQASQCSSCNRRMLAELQKLVNETE*
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