NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI24003J15210_10000664

Scaffold JGI24003J15210_10000664


Overview

Basic Information
Taxon OID3300001460 Open in IMG/M
Scaffold IDJGI24003J15210_10000664 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-28
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14657
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (73.08%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Legionellales → unclassified Legionellales → Legionellales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)48.9699Long. (o)-130.6666Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025287Metagenome / Metatranscriptome202Y
F056140Metagenome / Metatranscriptome138Y

Sequences

Protein IDFamilyRBSSequence
JGI24003J15210_1000066422F056140AGGAGLKKLVIATAVALFSTTAIAADKLTIINSGSKTGGFSMQSTAYSTDLADTYDINLVNPGDRCVALGSLLPKIDGPVLMPWASDYEAVGRDGGCVKFDINSAITLRYDSAPLFVCTRGGNVAKDSGRVAHTVPVDGPLARVVKEFNNEFGTTHKPVVYDGSGDARLALINGEVDYALLSKKHVLVVTAADKAITCEQSLASAGPNSLPAQTGNPKLAFGWDMTWMALNMTPAQADSLKMRMMEKHLDCTTAIGTWSKCNTVYNTSWDLTTNEINSRWEPMVESQR*
JGI24003J15210_100006649F025287AGGAMKVSVDVYTKDVDAGLAAFKLALXNGATDAQLRSNEDWETKKFESLNLMFEADNTSEAITSLDNGPFARDVADLK*
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