NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI24003J15210_10001176

Scaffold JGI24003J15210_10001176


Overview

Basic Information
Taxon OID3300001460 Open in IMG/M
Scaffold IDJGI24003J15210_10001176 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-28
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11462
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (47.06%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)48.9699Long. (o)-130.6666Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000464Metagenome / Metatranscriptome1105Y
F004235Metagenome / Metatranscriptome447Y
F073442Metagenome120Y

Sequences

Protein IDFamilyRBSSequence
JGI24003J15210_100011761F000464N/AMKLSQQQKIRMYSHHDRDLDIEDEFWPIMGILLAIIGVWTTIVHWIDWATLDVIPWWAEPFTITPVVFLLVMKERFDSINPLHWWPMFWGYQAKLPDEDRITIRPLDTERIMEQHGGRLNVYIIDYEHIKFRRKKD
JGI24003J15210_1000117612F004235AGGAGGMATPQRTVTTLIGEDIRTIGKPITMIHLDWDVDADASREAMEAIINTVLSRGTILAAGAVYDTGTKQDYILEGNLTDTINSFTSLDGTVTGTLAQVLVEDIINLGTVDSVNFGSGTVACSIKSTLKFA*
JGI24003J15210_100011769F073442AGGMQRNFILTDVMKTGDHSKLEQFINLHSLPEQTVDVTGEYYTLHTHDLDSYDRKFAVIDSNSLPKQDLLTSNKEFVPELKRRCDLLHSQGFVFIKANPWESLDNIKNTKQYPEFDIEHIKWTGGVSWFWFYMYQKHKDTKFNFDHSDKKYDFLYLNKMPRAHRLKLYNKLKNKGVLENSLHTKWPDRKLPAEYELPWAPDYPHYGMDQDIFEKPYNDTACSIVSETNDNXNDVFMTEKIWKPIIAQQIFVVHGNYLYLQKLREMGFKTYNNYFEEAYDIDRDPNLRIDTIVDVCDRLRDAPWQDLYLQSKALRQYNFNHFFNEEKLSLEINKTLNLFFEFADTRQVSS*
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Institute for Fundamental Biomedical Research
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