NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI24003J15210_10002202

Scaffold JGI24003J15210_10002202


Overview

Basic Information
Taxon OID3300001460 Open in IMG/M
Scaffold IDJGI24003J15210_10002202 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-28
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8567
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (64.71%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)48.9699Long. (o)-130.6666Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006528Metagenome / Metatranscriptome371Y
F008385Metagenome334Y
F008795Metagenome328N
F026409Metagenome198Y
F096201Metagenome105N

Sequences

Protein IDFamilyRBSSequence
JGI24003J15210_1000220213F006528AGGAMKDKEKHSIKDIEKLAIETFKNIIEGSRSINGVTWNKIKNLKRKDQIICLKQLSQ*
JGI24003J15210_1000220215F008385AGGAGLVKTNIYLDYKICVKCGDPADVIESNKDYCCNCWFEKVNGKSFEEVDKQIKEEERFIKKK
JGI24003J15210_1000220216F026409N/AMKYLIIFILLSSCSFSDYDFNPSTTVLKQLIKGAKND*
JGI24003J15210_1000220217F008795AGGAGMIKVKLEANEVELALNIAAKRYIGNLRMGKTFSYGYTKGIKSQLTDGILGALGEVAYAKATNSFYNGSYSD
JGI24003J15210_100022029F096201N/AMKANQPKERRNTMNTYLITNNKNSLSYTKDFLNTSEARHWIINHLDLSNEWSINPVKKLHHTAYKKNYKNYILSTIEEDGEGKPLTSESEKISYIFDRFNSEYGFMIERVGKYKAMSEWLSGLSLNIEFYNDAIVDLAVKMGSIEPNPNDKMKDKVAANYWDFMANVILGFEPKKQVA*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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