NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI24003J15210_10002592

Scaffold JGI24003J15210_10002592


Overview

Basic Information
Taxon OID3300001460 Open in IMG/M
Scaffold IDJGI24003J15210_10002592 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-28
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7927
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (57.14%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)48.9699Long. (o)-130.6666Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008154Metagenome338Y
F041446Metagenome160Y
F041486Metagenome / Metatranscriptome160Y

Sequences

Protein IDFamilyRBSSequence
JGI24003J15210_1000259211F041446N/AMNNVRIALKVVEDQIRNEHELINAITDDAPGTLEILIDEGPDLSVIKLFGKSFVESLHLLADNLGIDKKNIKITTFNLTQDLSVWPNIEIQHPTEYFTAADRFEVPLDKKIQKHFGVFVGTSRWHRLYIASMMHGLYKDKTMMSFWQHHLNGSMPANLRMDDVMLKDTDEPLRERMFDFVKQLPLHLDKEDVKINDNKGADITRGDWETPYEILPYYNRIFIDIVCETWHEGQCFLPNEKTGRPIIAKTPFIAYAGKGFLGNLKKIGFKTFDKWWSEGYDNHEGVKRIQYMLREIRTISNYPVDRLQEIHQEMMPTLQHNYETIKSLTPETMLEKLKS*
JGI24003J15210_100025924F041486GGAMIISSIFGFILTVVGVNETAVAGYKIVTLGNNIQEKKEQKLLXXSLHEEAQQILKDVIKETGK*
JGI24003J15210_100025925F008154AGGAGMSKKKEDILLNDCYQEVFKVMIELQTRYNNQVIAGTMMAQALRLYKSNLTDEGFEAMVKVIADTGDSIQPFDAPSIN*
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Institute for Fundamental Biomedical Research
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