NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI24003J15210_10003572

Scaffold JGI24003J15210_10003572


Overview

Basic Information
Taxon OID3300001460 Open in IMG/M
Scaffold IDJGI24003J15210_10003572 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-28
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6749
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (66.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)48.9699Long. (o)-130.6666Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000720Metagenome / Metatranscriptome923Y
F004988Metagenome / Metatranscriptome416Y
F046006Metagenome152N
F090883Metagenome / Metatranscriptome108Y

Sequences

Protein IDFamilyRBSSequence
JGI24003J15210_1000357210F000720AGGAGMTLKDDKIMRATIPDRMMSTTFTLPIDDRKVVGIVNYTANKNGVIPLAFWVKIKPTDSYLDRELRASGKLISRCLQHGEDLKDLADTLSQDNIIGQMVNYFTKNVEDIIMGVPIDKKQRMLSTDPYASQMKE*
JGI24003J15210_1000357211F046006GGAGGVKEFLTPLGKYTNFVLLLLILHFCITVMVVNFRYIDRLNNTIDTMWHEIEQVKDTNIQLYQFIEEHGDDIKGR*
JGI24003J15210_1000357212F090883GGAGGMVTIADRMKRINNCRDMLTKVTCPRMRLMWKRNYEKLLKNYWEEEGERILNAAGQVH*
JGI24003J15210_1000357214F004988N/AMESESLVKTICPRCDGNGYIRITPVIAGVFDRSSEIDCPMCEEEFTHMGKKVTAHNGYVLLPKKQTRINIEGGRESKTKWSGETLPEVGK*

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