NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI24003J15210_10038991

Scaffold JGI24003J15210_10038991


Overview

Basic Information
Taxon OID3300001460 Open in IMG/M
Scaffold IDJGI24003J15210_10038991 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-28
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1666
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
unclassified Hyphomonas → Hyphomonas sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)48.9699Long. (o)-130.6666Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014669Metagenome / Metatranscriptome261Y
F044799Metagenome154Y
F049098Metagenome147N

Sequences

Protein IDFamilyRBSSequence
JGI24003J15210_100389911F044799AGGAGMIHWKTKEEMGGGFQFDKSEHLEVKYNALTEVETHEKNTMRTKYLVRDWWSNKQLRELRNFINDTLTERGDS*
JGI24003J15210_100389912F049098N/AMHLSHWEIHPTREIGDNMSRPNKISEETKSYNLTVSKADYNELDKFATRETDRYATQVSVADLIRNAIKLYLEDLREADKDDR*
JGI24003J15210_100389913F014669GGAMTDEIKTDITQRSYDKQNVLWAKLSAVRLGLVDKDQVKLGNQRDYLTWIPICVAKSRKLLKHNFELDKLAQVYSVNTRQYKDAKSR*
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