NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI24003J15210_10045834

Scaffold JGI24003J15210_10045834


Overview

Basic Information
Taxon OID3300001460 Open in IMG/M
Scaffold IDJGI24003J15210_10045834 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-28
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1485
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)48.9699Long. (o)-130.6666Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001839Metagenome628Y
F004629Metagenome430Y
F011253Metagenome293Y

Sequences

Protein IDFamilyRBSSequence
JGI24003J15210_100458342F001839N/AMKYFEKIDKDLLNNRNLNSHEKLIYIICKSFENAPRGARVSHKYLMQRTGIKTKKTLIKCLDNLSLYGLMARKQIGQGTCHYVFDKPTMQEYIRHNINKRKKISLTKNRKFKSYMDSLNNPQVIHINKFIKE*
JGI24003J15210_100458343F011253GAGGMKDRKLELNNIIKNMAKNKSLPYSAAITKIKKDRKGYFQAKDIKLKSKSLSTDRFQQYLKDIQENDTE*
JGI24003J15210_100458344F004629AGGAMIPNRLTVDQLDNYFQTATYVERYMPSPLNMKNRRTEMFLVIDKIFGIGKDKDSYKNEDKPRLKIRLNGEQIQIYEFCIMLLVKANEKDRDIISLRNFPYKRSFRQLKQFFLPSSHEKVRSDYYKALEEL
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