Scaffold JGI24004J15324_10027459

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold JGI24004J15324_10027459

Scaffold JGI24004J15324_10027459

Overview

Basic Information
Taxon OID	3300001472 Open in IMG/M
Scaffold ID	JGI24004J15324_10027459 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - LP-32
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1877
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium TMED41	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	49.2833	Long. (^o)	-134.6666	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F026126	Metagenome / Metatranscriptome	199	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24004J15324_100274593	F026126	AGG	MQRNFILTDVMKTGNHPELESYISMHSMEGQSFDMTGEYYTLHDYNLDSYDRRFAIIDTRSANDRLKDNPEFMDELHRRVDLLKSQGFVFIKANPWESLENISNHPEYSWPKVDVDHIKWTGGSTWFWYYMYKLHEGKTFNFDHSNKKYDFLYLNKTHRPHREKLYNKLSKKGILENSLH

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