 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300001472 Open in IMG/M |
| Scaffold ID | JGI24004J15324_10055556 Open in IMG/M |
| Source Dataset Name | Marine viral communities from the Pacific Ocean - LP-32 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 1159 |
| Total Scaffold Genes | 4 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
| Novel Protein Genes | 2 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Pacific Ocean | |||||||
| Coordinates | Lat. (o) | 49.2833 | Long. (o) | -134.6666 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F004629 | Metagenome | 430 | Y |
| F011253 | Metagenome | 293 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| JGI24004J15324_100555562 | F011253 | AGG | MNNRKAEIDKIIKDMVKNKSLPYANAVTKIKKDRKGYYQQKDIKIKSKSLSTDRFQQYLKDIQDNDTN* |
| JGI24004J15324_100555563 | F004629 | AGGA | MIPTRITVDELDNMFQIATYVERYLPSPSIKNKRTEMFSLIDRLYGIGKDKDCYKDDTKPRIKIRLNSGQLQTYEFCILLLVKATEPQRDIIQLRNFPYRKSFRELRKFFMPLSHEKVRSDYYKALQELMSLYNKHGYKYICK* |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |