NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold KiloMoana_1096665

Scaffold KiloMoana_1096665


Overview

Basic Information
Taxon OID3300001515 Open in IMG/M
Scaffold IDKiloMoana_1096665 Open in IMG/M
Source Dataset NameHydrothermal vent plume microbial communities from Kilo Moana, Pacific Ocean, of black smokers
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)813
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From Kilo Moana, Pacific Ocean, Of Black Smokers

Source Dataset Sampling Location
Location NameKilo Moana, ELSC, Pacific Ocean
CoordinatesLat. (o)-20.064428Long. (o)-176.171974Alt. (m)Depth (m)2600
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F101292Metagenome / Metatranscriptome102N

Sequences

Protein IDFamilyRBSSequence
KiloMoana_10966653F101292N/AVIKNANAAMENVPAKDVKRVNLATVTVIVPVVRKNAAALNKIELL*
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