NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold TahiMoana_1006258

Scaffold TahiMoana_1006258


Overview

Basic Information
Taxon OID3300001516 Open in IMG/M
Scaffold IDTahiMoana_1006258 Open in IMG/M
Source Dataset NameHydrothermal vent plume microbial communities from Tahi Moana, Pacific Ocean, of black smokers
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1381
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From Tahi Moana, Pacific Ocean, Of Black Smokers

Source Dataset Sampling Location
Location NameTahi Moana, ELSC, Pacific Ocean
CoordinatesLat. (o)-20.064428Long. (o)-176.171974Alt. (m)Depth (m)2230
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014552Metagenome262Y

Sequences

Protein IDFamilyRBSSequence
TahiMoana_10062583F014552GGAGGVTKYSLGTPSLMRGLDKGQECEVKFITDPKPVETEHGSKFDIQVQLLSHPHESYSSLSKEGRRLVWRTNCHVVRVTITDLFVDNDEQFIKDWYANTWTISCKEDGNIWVES*

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