NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold TahiMoana_1058113

Scaffold TahiMoana_1058113


Overview

Basic Information
Taxon OID3300001516 Open in IMG/M
Scaffold IDTahiMoana_1058113 Open in IMG/M
Source Dataset NameHydrothermal vent plume microbial communities from Tahi Moana, Pacific Ocean, of black smokers
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)798
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From Tahi Moana, Pacific Ocean, Of Black Smokers

Source Dataset Sampling Location
Location NameTahi Moana, ELSC, Pacific Ocean
CoordinatesLat. (o)-20.064428Long. (o)-176.171974Alt. (m)Depth (m)2230
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F074128Metagenome120N
F076631Metagenome118Y

Sequences

Protein IDFamilyRBSSequence
TahiMoana_10581131F074128N/AETEHGSKFDIRVLLLSHPHESYSSLRKDVAVGNKKGMELVWRTNCHVVRVTIVNLFVDNDEQFVKDWYANTWTISCREDGNIWVES*
TahiMoana_10581133F076631N/AEQMLIDFEEFMLPQARESFQKFWMGAMGNAAKELKGSEEGSNLSILHNITQDLSGQPWYVQALASKMLPIITDAVKTQPKRTSDAVVRMGLAEERT*

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